Daniel de Oliveira
Assistant Professor (Prof. Adjunto I)
Fluminense Federal University
Computer Science Department
Rua Passo da Pátria 156 - Bloco E - sala 501
São Domingos
24210240 - Niteroi, RJ - Brasil
danielcmo [at] ic [dot] uff [dot] br
Selected Publications
Fell free to contact me in case you want some of my papers that you could not find online. Name in citations: OLIVEIRA, D.
For a complete list of publications, please refer to my CV at Lattes platform.
Journal Papers
2013
Performance Evaluation of Parallel Strategies in Public Clouds: a Study with Phylogenomic Workflows
Daniel de Oliveira, Kary Ocana, Eduardo Ogasawara, Jonas Dias, João Gonçalves, Fernanda Baião and Marta Mattoso, Future Generation Computer Systems, v. 1, p. 1-14, 2013.[ PDF ]
2012
An Adaptive Parallel Execution Strategy for Cloud-based Scientific Workflows
Daniel de Oliveira, Kary Ocana, Eduardo Ogasawara, Jonas Dias, Fernanda Baião and Marta Mattoso, Concurrency and Computation, v. 24, p. 1531-1550, 2012.
A Provenance-based Adaptive Scheduling Heuristic for Parallel Scientific Workflows in Clouds
Daniel de Oliveira, Kary Ocana, Fernanda Baião and Marta Mattoso, Journal of Grid Computing, v. 10, p. 521-552, 2012.
2011
Capturing Distributed Provenance Metadata from Cloud-Based Scientific WorkflowsCarlos Paulino, Daniel de Oliveira, Sergio Serra, Maria Luiza Campos and Marta Mattoso, Journal of Information and Data Management (JIDM), v. 2, p. 43-50, 2011. [ PDF ]
Many Task Computing for Orthologous Genes Identification in Protozoan Genomes Using Hydra
Fabio Coutinho, Eduardo Ogasawara, Daniel de Oliveira, Vanessa Braganholo, Alexandre Lima, Alberto Davila and Marta Mattoso, Concurrency and Computation, v. 1, p. 1-16, 2011.
An Algebraic Approach for Data-Centric Scientific Workflows
Eduardo Ogasawara, Daniel de Oliveira, Jonas Dias, Fabio Porto, Patrick Valduriez and Marta Mattoso, Proceedings of the VLDB Endownment, v. 4, p. 1328-13369, 2011. [ PDF ]
2010
Towards supporting the life cycle of large scale scientific experiments
Marta Mattoso, Guilherme Travassos, Claudia Werner, Vanessa Braganholo, Eduardo Ogasawara, Daniel de Oliveira, Sergio Serra, Wallace Martinho, Leonardo Murta, International Journal of Business Process Integration and Management, v. 5, p. 79-92, 2010. [ PDF ]
Is Cloud Computing the Solution for Brazilian Researchers?
Daniel de Oliveira and Eduardo Ogasawara, International Journal of Computer Applications, v. 6, p. 19-23, 2010. [ PDF ]
Conference and Workshop Papers
2012
Cloud-based Phylogenomic Inference of Evolutionary Relationships: A Performance Study
Daniel de Oliveira, Kary Ocana, Eduardo Ogasawara, Jonas Dias, João Gonçalves and Marta Mattoso, 2nd International Workshop on Cloud Computing and Scientific Applications (CCSA), held in conjunction with the 12th IEEE/ACM International Symposium on Cluster, Cloud and Grid Computing (CCGrid 2012), May, 2012. [ PDF ] [ Slides ]Using Domain-Specific Data to Enhance Scientific Workflow Steering Queries
João Gonçalves, Daniel de Oliveira, Kary Ocana, Eduardo Ogasawara and Marta Mattoso, 4th International Provenance and Annotation Workshop, July, 2012. [ PDF ] [ Slides ]Enabling Re-Executions of Parallel Scientific Workflows Using Runtime Provenance Data
Flavio Costa, Daniel de Oliveira, Kary Ocana, Eduardo Ogasawara and Marta Mattoso, 4th International Provenance and Annotation Workshop, July, 2012. [ PDF ] [ Slides ]Exploring Molecular Evolution Reconstruction Using a Parallel Cloud-based Scientific Workflow
Kary Ocana, Daniel de Oliveira, Felipe Horta, Jonas Dias, Eduardo Ogasawara and Marta Mattoso, Brazilian Symposium on Bioinformatics, 2012. [ PDF ] [ Slides ]Discovering Drug Targets for Neglected Diseases Using a Pharmacophylogenomic Cloud Workflow
Kary Ocana, Daniel de Oliveira, Eduardo Ogasawara, Jonas Dias and Marta Mattoso, Proceedings of the 8th IEEE International Conference on e-Science, 2012. [ PDF ] [ Slides ]Using Provenance Analyzers to Improve the Performance of Scientific Workflows in Cloud Environments
João Gonçalves, Daniel de Oliveira, Kary Ocana, Eduardo Ogasawara, Jonas Dias and Marta Mattoso, Anais do 27º Simpósio Brasileiro de Bancos de Dados (SBBD 2012), 2012. [ PDF ] [ Slides ]Handling Failures in Parallel Scientific Workflows Using Clouds
Flavio Costa, Daniel de Oliveira, Kary Ocana, Eduardo Ogasawara, Jonas Dias and Marta Mattoso, 7th Workshop on Workflows in Support of Large-Scale Science, 2012. [ PDF ] [ Slides ]
2011
A Performance Evaluation of X-ray Crystallography Scientific Workflow Using SciCumulusDaniel de Oliveira, Kary Ocana, Eduardo Ogasawara, Jonas Dias, Fernanda Baião and Marta Mattoso, Proceedings of the Fourth IEEE 2011 International Conference on Cloud Computing (CLOUD 2011), 2011. [ PDF ] [ Slides ]Towards a Cost Model for Scheduling Scientific Workflows Activities in Cloud Environments
Vitor Gamboa Viana, Daniel de Oliveira and Marta Mattoso, 2011 IEEE Scientific Workflow Workshop, co-located with IEEE World Congress on Services, 2011. [ PDF ] [ Slides ]SciPhy: A Cloud-based Scientific Workflow for Phylogenetic Analysis of Drug Targets in Protozoan Species
Kary Ocana, Daniel de Oliveira, Eduardo Ogasawara, Alberto Davila, Alexandre Lima and Marta Mattoso, Brazilian Simposium of Bioinformatics, 2011. [ PDF ] [ Slides ]Optimizing Phylogenetic Analysis Using SciHmm Cloud-based Scientific Workflow
Kary Ocana, Daniel de Oliveira, Jonas Dias, Eduardo Ogasawara and Marta Mattoso, Proceedings of the 7th IEEE e-Science conference, 2011. [ PDF ] [ Slides ]
2010
SciCumulus: A Lightweight Cloud Middleware to Explore Many Task Computing Paradigm in Scientific WorkflowsDaniel de Oliveira, Eduardo Ogasawara, Fernanda Baião and Marta Mattoso, Proceedings of the 3rd IEEE International Conference on Cloud Computing, 2010. [ PDF ] [ Slides ]An Adaptive Approach for Workflow Activity Execution in Clouds
Daniel de Oliveira, Eduardo Ogasawara, Fernanda Baião and Marta Mattoso, International Workshop on Challenges in e-Science, 2010. [ PDF ] [ Slides ]Modeling Parallel Bioinformatics Workflows Using MapReduce
Daiel Vega, Daniel de Oliveira, Eduardo Ogasawara and Marta Mattoso, International Workshop on Challenges in e-Science, 2010. [ PDF ] [ Slides ]
Papers in Portuguese
Monitoramento em Tempo Real de Workflows Científicos Executados em Paralelo em Ambientes DistribuídosJulliano Pintas, Daniel de Oliveira, Kary Ocana, Jonas Dias and Marta Mattoso, VI e-Science Workshop (em conjunto com Congresso da Sociedade Brasileira de Computação 2012), 2012. [ PDF ] [ Slides ]Reprodução de Experimentos Científicos Usando Nuvens
Ary Oliveira, Igor Modesto, Daniel de Oliveira and Marta Mattoso, Anais do 27º Simpósio Brasileiro de Bancos de Dados (SBBD 2012), 2012. [ PDF ] [ Slides ]SciCumulus-ECM: Um Serviço de Custos para a Execução de Workflows Científicos em Nuvens Computacionais
Vitor Gamboa Viana, Daniel de Oliveira and Marta Mattoso, XXVI Simposio Brasileiro de Banco de Dados, 2011. [ PDF ] [ Slides ]Heurísticas para Controle de Execução de Atividades de Workflows Científicos na Nuvem
Flavio Costa, Daniel de Oliveira, and Marta Mattoso, Anais do Workshop de Teses e Dissertações em Banco de Dados (WTDBD), 2011. [ PDF ] [ Slides ]Captura de Metadados de Proveniência para Workflows Científicos em Nuvens Computacionais
Carlos Paulino, Daniel de Oliveira, Sergio Serra, Maria Luiza Campos and Marta Mattoso, Anais do XXV Simpósio Brasileiro de Banco de Dados, 2010. [ PDF ] [ Slides ]